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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs181875 chr5:156016560 T/A 0.000143 404 16.75 13.78 13.38 KM Plot
LGG rs1824153 chr5:92858742 C/G 0.000175 405 15.17 16.17 17.93 KM Plot
LGG rs183266770 chr2:17873211 T/C 1.44E-8 406 15.3 15.67 7.33 KM Plot
LGG rs1835862 chr10:64056068 G/A 8.65E-5 394 12.1 15.47 16.12 KM Plot
LGG rs183678217 chr6:33801216 T/C 9.68E-5 407 15.2 17.23 11.42 KM Plot
LGG rs183685363 chr7:55922749 C/T 0 401 15.2 15.93 3.77 KM Plot
LGG rs185022464 chr10:122682464 G/A 0.000132 400 16.3 14.6 17.97 KM Plot
LGG rs1855704 chr1:78518668 A/G 1.55E-15 398 3.93 13.23 15.67 KM Plot
LGG rs1864836 chr10:64028538 C/G 0.000142 400 12.17 15.37 15.88 KM Plot
LGG rs1872238 chr3:100910420 T/C 2.3E-7 407 15.67 14.8 10.07 KM Plot
LGG rs187406 chr16:23737679 A/G 0.000106 407 12.9 16.27 14.47 KM Plot
LGG rs1877770 chr6:163252354 A/G 9.25E-6 407 8 12.17 15.7 KM Plot
LGG rs187984232 chr20:61492362 C/A 2.35E-6 395 15.7 15.25 5.5 KM Plot
LGG rs1881386 chr9:94627231 G/A 6.99E-5 407 15.18 16.47 17.55 KM Plot
LGG rs188167182 chr2:17935495 T/C 1.43E-8 405 15.2 15.97 7.33 KM Plot